Contributors

Staff

Kathrin Fenner

Eawag, Dübendorf, Switzerland, Co-Director

Stefan Kramer

Johannes Gutenberg-Universität Mainz, Germany, Co-Director

Jörg Wicker

Johannes Gutenberg-Universität Mainz, Germany, Co-Director

Martin Gütlein

Johannes Gutenberg-Universität Mainz, Germany, Researcher

Diogo Latino

Eawag, Switzerland, Researcher

Emanuel Schmid

ETH Zürich, Switzerland, Programmer

Larry Wackett

University of Minnesota, USA, Reviewer, Consultant

Student assistants

Data Curators

Cyrill Kern

Eawag

Chao Feng

Eawag

Julian Kornprobst

Eawag

Programmers

Steven Lang

Johannes Gutenberg-Universität Mainz, Germany

Tim Lorsbach

Johannes Gutenberg-Universität Mainz, Germany

International Scientific Advisory Board

Lynda Ellis

University of Minnesota, USA

Bob Boethling

Office of Pollution Prevention and Toxics, US Environmental Protection Agency

Jeffrey P. Osborne

Manchester College, Indiana, USA

Former Staff

Lynda Ellis

University of Minnesota, former Co-Director.

Yuemo Zeng

University of Minnesota, former Graduate Research Assistant, completing the Atrazine, Naphthalene, Toluene, and Pentachlorophenol Family Pathway.

Eva Young

University of Minnesota, former Graduate Research Assistant, obtaining additional compound information, standardizing and reformatting compound pages, assisting with the development of formula, CAS and EC searching, updating the 2,4-D Pathway, completing the anerobic Toluene Pathway.

Dong Jun Oh

University of Minnesota, former Graduate Research Assistant, assisting with links back from Entrez and compound information, and completing the Orcinol, Trichloroethylene, 4-Chlorobiphenyl, 2,4-Dichlorobenzoate, Dibenzothiophene, Benzoate (anaerobic), Dimethyl Sulfoxide & the Organosulfide Cycle, m-Xylene, o-Xylene, 2-Aminobenzenesulfonate, Gallate (anaerobic), Nitroglycerin, Mandelate, p-Cymene, Benzonitrile and Camphor Pathways. Prototype UM-BBD Pathway Generator.

Jingfeng Feng

University of Minnesota, former Graduate Research Assistant, completing the Methyl ethyl ketone, Fluorene, 2-Aminobenzoate, 2-Nitropropane, Acetylene, Benzoate, Organosilicone (an/aerobic), Tri-n-butyltin and DDT aerobic and anaerobic Pathway.

Jun Ouyang

University of Minnesota, former Graduate Research Assistant, completing the Thiocyanate, Phanenthrene, Phenanthrene (fungal 9S,10S) and Phenanthrene (fungal 9R, 10R) Pathway.

Jian Ma

University of Minnesota, Summer Student, C1 Microbial Metabolism Metapathway Map, C1 Metabolic Cycle Pathway, Methanogenesis, Methanesulfonic acid, Dimethyl ether, Methyl fluoride and 2-Aminobenzoate (anaerobic) pathways.

Stephen Stephens

University of Minnesota, former Undergraduate Research Assistant, Index to Graphical Pathway Maps and Reaction Mechanisms, adding vanillin compounds to the 2,4-Dichlorobenzoate pathway and completing the Acrylonitrile, Phthalate family, Anaerobic Phenol, p-Xylene, Atrazine, 2-Aminobenzenesulfonate, n-Octane, 1,3-Dichloro-2-propanol, m-Cresol Pathways, and BTEX Metabolism Metapathway.

Ryan McLeish

University of Minnesota, former Undergraduate Research Assistant, beta-Hexachlorocyclohexane, Chlorobenzene, Styrene, Dichloromethane, Ethylbenzene, Anerobic Ethylbenzene, 3-Chloroacrylic Acid, Toluene-4-sulfonate, Naphthalenesulfonate Family, and Dibenzofuran Pathways. Scrollable pathway list. Boolean "name contains" search. Pathway Generator.

Zhifu Sun

University of Minnesota, former Data Processing Technician, adding 4-chlorophenylacetate to the Tyrosine Path way, entering the Cyclohexanol Pathway, modifying the Oganomercury Pathway and completing 1-Aminocyclopropane-1-carboxylate, Biphenyl and Methionine and Threonine Pathways, The image map for Meta Pathway.

Thanh Trinh

University of Minnesota, Former Undergraduate Research Assistant, contributing 2-Nitropropane Pathway, completing the 3-Phenylpropionate, Carbazole and gamma-Hexachlorocyclohexane Pathway.

Ben Vickers

University of Minnesota, Former Undergraduate Research Assistant, completing the Nicotine and 4-Carboxy-4'-Sulfoazobenzene Pathway.

Jenny Kang

University of Minnesota, Data Processing Technician, completing the Cyanamide and Adamantanone Pathways, graphical organic functional groups list, and modifying the Napthalene 1,2-Dioxygenase Reactions page, the 3-Chloroacrylic Acid and gamma-Hexachlo rocyclohexane Pathway.

Stuart Speedie

University of Minnesota, Computer Consultant, developer of the CORE database.

Doug Hershberger

University of Minnesota, Postdoctoral Research Assistant, and contributor of a second group of reactions to the Glyphosate Pathway, s-Triazine Metabolism, UM-BBD Metapathway and Caprolactam Pathway.

Edward Bryan

University of Minnesota, Postdoctoral Research Assistant, and contributor of a reaction to the n-Octane Pathway.

Guang Yao

University of Minnesota, Graduate Research Assistant, completing the 1,2,4-Trichlorobenzene, Nitrilotriacetate, Dodecyl Sulfate, 2,4,6-Trinitrotoluene (anaerobic) and Arsonoacetate Pathway.

Jiangbi Liu

University of Minnesota, Data Processing Technician, completing the 1,4-Dichlorobenzene Pathway, modifying the 2,4,5-Trichlorophenoxyacetic Acid, Carbon Tetrachloride (anaerobic) Pathway, and contributing the Napthalene 1,2-Dioxygenase Reactions and Toluene 1,2-Dioxygenase Reactions pages.

Jennifer Dommer

University of Minnesota, Summer Research Assistant, completing the Periodic Table (Traditional) (Spiral), and the Trifluoroacetate and Chromium(VI) Pathways.

Prashad Kotharu

University of Minnesota, Data Processing Technician, completing the Bisphenol A, Mordant Yellow 3, Tetrachlorobenzene, Propylene, Hexahydro-1,3,5-trinitro-1,3,5-triazine (aerobic) (anaerobic) Pathways.

Wenjun Kang

University of Minnesota, Former Graduate Research Assistant, completing the Z-Phenylacetaldoxime, Triphenyltin and 4-Hydroxyacetophenone Pathways.

Carla Essenberg

University of Minnesota, Data Processing Technician, completing the Phenylboronic Acid Degradation and Pivalic Acid (Anaerobic) Pathways.

Carla Essenberg

Sean Anderson

University of Minnesota, Data Processing Technician, updating the Tetrachloroethene (anerobic) and completing the Osmium Pathways.

John Schrom

University of Minnesota,Undergraduate Student, completing the Hypophosphite and Fosfomycin Pathways.

Yogesh Kale

University of Minnesota,Graduate Student, completing the Valanimycin Synthesis, Picric Acid, Cyclopropanecarboxylate, and Cyclohexane Pathways.Updating the C1 cycle pathway.

David Roe

University of Minnesota,Graduate Research Assistant.

Rachael Long

University of Minnesota, starting the Thiobenzamide Pathway, and contribuing the fungal Caffeine Pathway.

Edward LaBelle

BioC 5309, University of Minnesota, completing the Nylon Oligomer Pathway.Later completing the Isoniazid Pathway.

Chunhui Li

University of Minnesota, Postdoctoral Associate.

Sujana Mittapalli

University of Minnesota, Graduate Research Assistant.

Junfeng Gao

University of Minnesota,Graduate Research Assistant.

Nick Walczak

University of Minnesota,Graduate Research Assistant.

Shawn Balcome

University of Minnesota,Graduate Research Assistant.

Yingxu Liu

University of Minnesota, Graduate Research Assistant, updating the Benzoate Pathway. Contributor of the Acenaphthylene Pathway.

Michael Turnbull

University of Minnesota, Junior Scientist, completing the 4-Fluorobenzoate, updating the beta-1,2,3,4,5,6-Hexachlorocyclohexane, Phthalate and Nicotine Pathways. Contributor of the Triazophos, Acenaphthylene, Diazepam and Benomyl Pathways.


Other Contributors

Charlotte Rosendahl Pedersen

BioC 5309, University of Minnesota; Completing Methyl tert-butyl ether Pathway.

William C. Ford

BioC 5309, University of Minnesota; Completing Bromoxynil Pathway.

Greg S. Bill

BioC 5309, University of Minnesota; Completing Dibenzo-p-Dioxin Pathway.

Sathit Niratisai

University of Minnesota; Contributing 2-Nitropropane Pathway.

Yuji Nagata

University of Tokyo; Contributing gamma-Hexachlorocyclohexane Pathway.

Jiri Damborsky

Masaryk University; Contributing gamma-Hexachlorocyclohexane Pathway.

Sara McFarlan

BioC 5309, University of Minnesota; Completing 2,4,6-Trinitrotoluene Pathway and contributing 2,4,6-Trinitrotoluene (anaerobic) Pathway.

Cynthia Zook

University of Minnesota; Contributing DDT areobic and anareobic Pathways.

Anna Maria Solanas

University of Barcelona; Contributing Fluorene Pathways.

Yingching Yu

University of Minnesota; duplicate CAS numbers and duplicate EC codes checking.

Jodi Bjerke

University of Minnesota; Tetrahydrofuran Pathway.

Trung Bui

University of Minnesota; assisting with compound information and clickable pathway gifs.

Cathy Cornett

BioC 5309, University of Minnesota; completing the Parathion Pathway.

Michael Burns

University of Minnesota; assisting with compound information, and completing the Glyphosate Pathway.

Sandy Etienne

BioC 5309, University of Minnesota; completing the 3-Methylquinoline Pathway.

Kevin Gray

Energy BioSystems; Dibenzothiophene Desulfurization Pathway.

John Haddock

Southern Illinois University at Carbondale; 4-Chlorobiphenyl Pathway.

Brian Hill

Dartmouth College; 2,4,5-T Pathway; 2,4-D Pathway.

Renhao Li

University of Minnesota; 1,2-Dichloroethane Pathway.

Andrea Marconi

Universita di RomaTre; Styrene Pathway.

Betsy M. Martinez-Zayas

BioC 5309, University of Minnesota; Propylene Pathway.

Hugh McTavish

University of Minnesota; maintaining the Conference page; 4-Nitrophenol and Nitrobenzene Pathways.

Peter Middeldorp

Wageningen Agricultural University, the Netherlands; beta-Hexachlorocyclohexane Pathway.

Margie Romine

Pacific Northwest National Laboratory; Dibenzothiophene Desulfurization Pathway.

Jill Kuglin Schweitzer

University of Minnesota; adding the phenol 2-monooxygenase reaction to the 4-nitrophenol pathway.

Colin Sweeney

University of Minnesota, Morris; updating the Atrazine and completing the Tyrosine Pathways.

Michelle Wagner

University of Minnesota; starting the Tyrosine Pathway.

Yuhui Yang

BioC 5309, University of Minnesota; completing the Pentaerythritol tetranitrate Pathway.

Sandra Wyman

BioC 5309, University of Minnesota; completing the Triethanolamine Pathway.

Timothy J. Tripp

BioC 5309, University of Minnesota; completing the Carbon Tetrachloride (anaerobic) Pathway.

Marielle Vigouroux

BioC 5309, University of Minnesota; completing the Iprodione Pathway.

Danijela Markovic

BioC 5309, University of Minnesota; completing the 1,2,3-Tribromopropane Pathway.

Valerie Anne Edwards

BioC 5309, University of Minnesota; completing the 2-Chloro-N-isopropylacetanilide Pathway.

Yichiou Wan

University of Minnesota, completing the 1,3-Dichloropropene Family Pathway.

Shulan Tian

University of Minnesota, completing the Limonene Pathway.

Diana Wong

University of Minnesota, completing the alpha-Pinene Pathway.

Shiqian Li

University of Minnesota, completing the alpha-Pinene Pathway.

Xinyu Zhou

University of Minnesota, completing the Cyclohexylsulfamate Pathway.

Fei Xu

University of Minnesota, completing the Dimethyl phosphinic acid Pathway.

Bo Kyeng Hou

University of Minnesota, completing the 1-Naphthoic Acid Pathway.

Bo Kyeng Hou

Sivakumaran Raman

University of Minnesota, completing the 1-Methylnaphthalene Pathway.

Branko Strok

University of Minnesota, completing the 2-Methylnaphthalene Pathway.

Kevin Watts

BioC 5309, University of Minnesota, completing the Methylarsonate Pathway.

Yinghui Wang

BioC 5309, University of Minnesota, completing the N-Cyclopropylmelamine Pathway.

Ike W. Bradlich

BioC 5309, University of Minnesota, completing the 2,4-Dichloroaniline Pathway.

Miruthubashini Raveendranathan

BioC 5309, University of Minnesota, completing the Selenate Pathway.

Yan Zhang

BioC 5309, University of Minnesota, completing the Tetrachlorobenzene Pathway.

Varsha P. Chhiba

CSIR, South Africa, completing the Mordant Yellow 3 Pathway.

Kevin Viken

BioC 5309, University of Minnesota, completing the Tetrabromobisphenol A Pathway.

Jeff Roberts

BioC 5309, University of Minnesota, completing the Hexahydro-1,3,5-trinitro-1,3,5-triazine (aerobic) (anaerobic) Pathways.

Chi Lai

University of Minnesota; Completing Isoproturon Pathway.

Vamshi Vrukodar

University of Minnesota; organic functional group name contains search for btrules.

Jordan Wood

University of Minnesota, developing code for displaying UM-BBD Biotransformation rules in accord for a reaction.

Melissa Straffon

BioC 5309, University of Minnesota, completing the Pyrrole-2-carboxylate Pathway.

Meaghan Fitzgerald

Undergraduate Bioinformatics Summer Institute summer intern, updating the Nicotine and completing the 1,1,1-Trichloroethane (an/aerobic) Pathways.

Nathaniel Keith

BioC 5309, University of Minnesota, completing the Pyrene Pathway.

Ted Sands

University of Minnesota, completing the 1,1,1-Trichloroethane (an/aerobic) Pathway.

Tony Dodge

University of Minnesota, completing the 1,1,1-Trichloroethane (an/aerobic) Pathway and updating web pages for the Biochemical Periodic Tables.

Cheng-Min Tann

University of Minnesota, completing the Benzyl Sulfide Pathway.

Gang Cheng

BioC 5309, University of Minnesota, completing the n-Hexane Pathway.

David Wunder

BioC 5309, University of Minnesota, completing the 2,4-Dichlorotoluene Pathway.

Skikala Gajjala

BioC 5309, University of Minnesota, completing the Perchlorate (anaerobic) Degradation Pathway.

Matthew Smith

BioC 5309, University of Minnesota, starting the Pivalic Acid (Anaerobic) Pathway.

Tyler D. Hall

BioC 5309, University of Minnesota, completing the Branched-Chain Dodecylbenzene Sulfonate Pathway.

David Joseph De Grio

BioC 5309, University of Minnesota, starting the Fosfomycin Pathway.

Edward Zhang

BioC 5309, University of Minnesota, starting the Benzo(a)pyrene Pathway.

Robyn Geldner

BioC 5309, University of Minnesota, starting the Anthracene Pathway.

Mark Fischbach

University of Minnesota undergraduate, completing the Anthracene Pathway.

Jiun-guo Yu

BioC 5309, University of Minnesota, completing the Anthracene Pathway.

Maria L. Stewart

BioC 5309, University of Minnesota, starting the 3-Fluorobenzoate Pathway.

Alex Galaitsis

BioC 5309, University of Minnesota, starting the thiophene-2-Carboxylate Pathway.

Richard Kriske

University of Minnesota, starting the Tetralin Pathway.

Dean Binger

BioC 5309, University of Minnesota, starting the Citronellol Pathway.

Jui-Ying Hsieh

BioC 5309, University of Minnesota, starting the Geraniol Pathway.

Kathrin Fenner

University of Minnesota, starting the Thioacetamide Pathway.

Daniel Luoma

BioC 5309, University of Minnesota, starting the 2-Methylnaphthalene (Anaerobic) Pathway.

Andrew Vail

BioC 5309, University of Minnesota, starting the Menthol (anaerobic) Pathway.

Stephan M. Cameron

BioC 5309, University of Minnesota, starting the Caffeine Pathway.

Andrew W. Rabins

BioC 5309, University of Minnesota, starting the Testosterone Pathway.

Janice Frias

BioC 5309, University of Minnesota, starting the 2-Mercaptobenzothiazole Pathway.

Daniel Baron

BioC 5309, University of Minnesota, starting the Isooctane Pathway, and completing the 4-Hydroxypyridine Pathway.

Boah Vang

BioC 5309, University of Minnesota, starting the Hexadecyltrimethylammonium chloride Pathway.

Brandon R. Goblirsch

BioC 5309, University of Minnesota, starting the 4-(1-Ethyl-1,4-dimethyl-pentyl)phenol Pathway.

Valerie Klema

BioC 5309, University of Minnesota, starting the Endosulfan Pathway.

Brian Burke

University of Minnesota, starting the Phthalate Family Pathway.

Shane M. Cain

University of Minnesota, starting the Phthalate Family Pathway.

David Nelson

University of Minnesota, starting the N-Nitrosodimethylamine Pathway.

Rakesh K. Jain

Institute of Microbial Technology, Chandigarh, India, starting the Nitrophenol Family Pathway.

Ashvini Chauhan

Institute of Microbial Technology, Chandigarh, India, starting the Nitrophenol Family Pathway.

Gunjan Pandey

Institute of Microbial Technology, Chandigarh, India, starting the Nitrophenol Family Pathway.

Akash Kumar

BioC 5309, University of Minnesota, starting the Furfural Pathway.

Tanhia Gonzalez

BioC 5309, University of Minnesota, starting the Asulam Pathway.

John A. Bumpus

University of Northern Iowa, starting the Anthracene (fungal) Pathway.

Li Ding

BioC 5309, University of Minnesota, starting the Bisphenol F Pathway.

Jason Vevea

BioC 5309, University of Minnesota, starting the Dimethyl isophthalate Pathway.

Luke Kane

University of Minnesota, completing the Dimethyl isophthalate Pathway.

Erik Reynolds

BioC 5309, University of Minnesota, starting the Pyridoxine Pathway.

Nicholas Rossi

BioC 5309, University of Minnesota, starting the Pyridoxine Pathway.

Ah-Young Kang

BioC 5309, University of Minnesota, starting the Thiamin Pathway.

Jeffrey M. Flynn

BioC 5309, University of Minnesota, starting the 2,4-Dinitrotoluene Pathway.

Wanying Yao

BioC 5309, University of Minnesota, starting the Quinaldine Pathway.

Daniel Norat

BioC 5309, University of Minnesota, starting the Metamitron Pathway.

James E Nogler

BioC 5309, University of Minnesota, starting the Morpholine Pathway.

Chimezie Ononenyi

BioC 5309, University of Minnesota, starting the 3-Nitrotyrosine Family Pathway.

Lee A. Meier

BioC 5309, University of Minnesota, starting the N-Methylmorpholine-N-oxide Pathway.

Kaci Howard

BioC 5309, University of Minnesota, starting the 2,6-Dichlorobenzonitrile Pathway.

Sarah Huebert

BioC 5309, University of Minnesota, starting the N,N-Diethyl-m-toluamide Pathway.

Stacy Buchholz

BioC 5309, University of Minnesota, starting the 3,3'-Dithiodipropionate Pathway.

Tim Bloomquist

University of Minnesota, starting the N-Oleoyl-N-methyltaurined Pathway.

Eric Stevenson

BioC 5309, University of Minnesota, starting the 1,4-Dioxane Pathway.

Sujana Mittapalli

BioC 5309, University of Minnesota, starting the Nitrofen Pathway.

Urvashi Pokhriyal

BioC 5309, University of Minnesota, starting the 3-(4-Sulfophenyl)butyrate Pathway.

Denise Hauge

BioC 5309, University of Minnesota, starting the Phorate Pathway.

Jeanna Danielson

BioC 5309, University of Minnesota, starting the Syringate Pathway.

Xiaochun Wang

BioC 5309, University of Minnesota, starting the Ketoprofen Pathway.

Prasad Kotharu

BioC 5309, University of Minnesota, starting the Bisphenol A Pathway.

Gulin Oz

BioC 5309, University of Minnesota, starting the Dibenzothiophene Pathway.

Dean Kraus

BioC 5309, University of Minnesota, starting the Phenylacetate Pathway.

Kenneth E. Lind

BioC 5309, University of Minnesota, starting the Phenylacetate Pathway.

Jeffrey P. Osborne

Manchester College, starting the Ibuprofen Pathway.

Andrea Hopper

Manchester College, starting the Ibuprofen Pathway.

Wes Johnson

Manchester College, starting the Permethrin Pathway.

Fiona Mills-Groninger

Manchester College, starting the Cypermethrin Pathway.

Michael Carpenter

Manchester College, starting the Cypermethrin Pathway.

Laranda Collins

Manchester College, Manchester College, starting the Cocaine Pathway.

Alicia Burkett

Manchester College, starting the Starch Oligomer and 1,5-Anhydro-D-fructose (Fungal) Pathways.

Epigmenio Sanchez

Manchester College, starting the Iminodisuccinate Pathway.

Mary Cullen

Manchester College, starting the Iminodisuccinate Pathway.

Joseph Planer

Manchester College, starting the Nitrate (anaerobic) Pathway.

BioC 8-001 Students, Fall 1995

University of Minnesota; started 42 pathways.

BioC 8-001 Students, Fall 1996

University of Minnesota; started 26 reaction mechanism graphics.

BioC 8-001 Students, Fall 1997

University of Minnesota; started 21 reaction mechanism graphics.

BioC 8-001 Students, Fall 1998

University of Minnesota; started 33 reaction mechanism graphics.

Former Student programmers

Kevin Kaster

Johannes Gutenberg-Universität Mainz, Germany

Daniel Franzen

Johannes Gutenberg-Universität Mainz, Germany

Julian Felix Rost

Johannes Gutenberg-Universität Mainz, Germany

Johannes Schmidt

Johannes Gutenberg-Universität Mainz, Germany

Christian Sußenberger

(as part of his Master Thesis), Johannes Gutenberg-Universität Mainz, Germany

Andrey Tyukin

(initial design of enviPath), Johannes Gutenberg-Universität Mainz, Germany

Initial Implementation

The initial design and implementation of the software was carried out by the students and teaching staff of the Software Engineering lecture and lab course at Johannes Gutenberg-Universität Mainz in the winter term 2013:

Michael Geilke

Teaching Assistant

Martin Leinberger

Tutor

Björn Back

Tihomir Zeljko Balic

Vincent Blaskowitz

Gero Büßing

Nils Döring

Marco Ehl

Jonas Förster

Marvin Gilbert

André Groß

Marcel Hahn

Dennis Harth-Brinkmann

Nicolas Hasemann

Michael Hedderich

Sabine Hüser

Felix Kallenborn

Kevin Kaster

Julian Kling

Kevin Kremer

Kai-Christopher Leutner

Sebastian Lieb

Tim Lorsbach

Michael Mardaus

Galina Mathies

Valentina Mathies

Arthur Michel

Marcel Mohrmann

Sebastian Müller

David Otto

Yosr Ouarghi Ben Salah

Leoni Pelle

Lukas Pensel

Iuliia Pliushch

Sascha Reger

Markus Richter

Julian Felix Rost

Johannes Schmidt

Kristina Weise